3D structure

PDB id
4YY3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S ribosomal subunit- HigB complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GGAAGAAG*UGUAAAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4YY3_017 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.0852
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

4YY3|1|A|G|409
4YY3|1|A|G|410
4YY3|1|A|A|411
4YY3|1|A|A|412
4YY3|1|A|G|413
4YY3|1|A|A|414
4YY3|1|A|A|415
4YY3|1|A|G|416
*
4YY3|1|A|U|427
4YY3|1|A|G|428
4YY3|1|A|U|429
4YY3|1|A|A|430
4YY3|1|A|A|431
4YY3|1|A|A|432
4YY3|1|A|C|433

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
30S ribosomal protein S4

Coloring options:


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