IL_4YY3_025

3D structure

PDB id

4YY3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit- HigB complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YY3_025 not in the Motif Atlas

Homologous match to IL_5J7L_029

Geometric discrepancy: 0.0647

The information below is about IL_5J7L_029

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

4YY3|1|A|G|597
4YY3|1|A|U|598
*
4YY3|1|A|A|640
4YY3|1|A|U|641
4YY3|1|A|A|642
4YY3|1|A|C|643

Current chains

Chain A

16S rRNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain Q

30S ribosomal protein S17