3D structure

PDB id
4YY3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S ribosomal subunit- HigB complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4YY3_033 not in the Motif Atlas
Homologous match to IL_4LFB_033
Geometric discrepancy: 0.0384
The information below is about IL_4LFB_033
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

4YY3|1|A|C|779
4YY3|1|A|A|780
4YY3|1|A|A|781
4YY3|1|A|A|782
4YY3|1|A|C|783
*
4YY3|1|A|G|799
4YY3|1|A|G|800
4YY3|1|A|U|801
4YY3|1|A|A|802
4YY3|1|A|G|803

Current chains

Chain A
16S rRNA

Nearby chains

Chain K
30S ribosomal protein S11

Coloring options:


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