IL_4YY3_054

3D structure

PDB id

4YY3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit- HigB complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YY3_054 not in the Motif Atlas

Geometric match to IL_4E48_006

Geometric discrepancy: 0.1084

The information below is about IL_4E48_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4YY3|1|A|G|1405
4YY3|1|A|U|1406
4YY3|1|A|C|1407
*
4YY3|1|A|G|1494
4YY3|1|A|U|1495
4YY3|1|A|C|1496

Current chains

Chain A

16S rRNA

Nearby chains

Chain Y

Killer protein