IL_4YY3_058

3D structure

PDB id

4YY3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit- HigB complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YY3_058 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.0659

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

4YY3|1|A|C|1431
4YY3|1|A|G|1432
4YY3|1|A|A|1433
4YY3|1|A|A|1434
4YY3|1|A|G|1435
*
4YY3|1|A|C|1466
4YY3|1|A|G|1467
4YY3|1|A|A|1468
4YY3|1|A|G|1469

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20