IL_4YZV_025

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_025 not in the Motif Atlas

Homologous match to IL_4LFB_024

Geometric discrepancy: 0.1337

The information below is about IL_4LFB_024

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

4YZV|1|QA|G|594
4YZV|1|QA|G|595
4YZV|1|QA|C|596
*
4YZV|1|QA|G|644
4YZV|1|QA|C|645

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QH

30S ribosomal protein S8

Chain QQ

30S ribosomal protein S17