IL_4YZV_113
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YZV_113 not in the Motif Atlas
- Homologous match to IL_7RQB_049
- Geometric discrepancy: 0.0373
- The information below is about IL_7RQB_049
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4YZV|1|RA|A|1262
4YZV|1|RA|U|1263
4YZV|1|RA|G|1264
4YZV|1|RA|A|1265
4YZV|1|RA|G|1266
4YZV|1|RA|U|1267
4YZV|1|RA|A|1268
4YZV|1|RA|A|1269
*
4YZV|1|RA|U|2011
4YZV|1|RA|G|2012
4YZV|1|RA|A|2013
4YZV|1|RA|A|2014
4YZV|1|RA|A|2015
4YZV|1|RA|U|2016
4YZV|1|RA|U|2017
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R5
- 50S ribosomal protein L32
- Chain RF
- 50S ribosomal protein L4
- Chain RW
- 50S ribosomal protein L22
Coloring options: