IL_4YZV_134

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4YZV|1|RA|G|1801, 4YZV|1|RA|G|1816, 4YZV|1|RA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_134 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0611

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4YZV|1|RA|U|1798
4YZV|1|RA|G|1799
4YZV|1|RA|C|1800
4YZV|1|RA|G|1801
4YZV|1|RA|A|1802
4YZV|1|RA|A|1803
4YZV|1|RA|C|1804
*
4YZV|1|RA|G|1813
4YZV|1|RA|G|1814
4YZV|1|RA|A|1815
4YZV|1|RA|G|1816
4YZV|1|RA|G|1817
4YZV|1|RA|U|1818
4YZV|1|RA|A|1819
4YZV|1|RA|U|1820
4YZV|1|RA|A|1821

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2