3D structure

PDB id
4YZV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUC*GCGAG
Length
8 nucleotides
Bulged bases
4YZV|1|RA|G|2576, 4YZV|1|RA|A|2577
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4YZV_162 not in the Motif Atlas
Geometric match to IL_7RQB_097
Geometric discrepancy: 0.0605
The information below is about IL_7RQB_097
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_90933.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
11

Unit IDs

4YZV|1|RA|C|2510
4YZV|1|RA|U|2511
4YZV|1|RA|C|2512
*
4YZV|1|RA|G|2574
4YZV|1|RA|C|2575
4YZV|1|RA|G|2576
4YZV|1|RA|A|2577
4YZV|1|RA|G|2578

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain RE
50S ribosomal protein L3

Coloring options:


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