IL_4YZV_167

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_167 not in the Motif Atlas

Geometric match to IL_4WF9_100

Geometric discrepancy: 0.1525

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4YZV|1|RA|C|2652
4YZV|1|RA|U|2653
4YZV|1|RA|A|2654
4YZV|1|RA|G|2655
4YZV|1|RA|U|2656
4YZV|1|RA|A|2657
4YZV|1|RA|C|2658
*
4YZV|1|RA|G|2663
4YZV|1|RA|G|2664
4YZV|1|RA|A|2665
4YZV|1|RA|C|2666
4YZV|1|RA|C|2667
4YZV|1|RA|G|2668

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6