IL_4YZV_196

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4YZV|1|XA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_196 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.0938

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4YZV|1|XA|G|409
4YZV|1|XA|G|410
4YZV|1|XA|A|411
4YZV|1|XA|A|412
4YZV|1|XA|G|413
4YZV|1|XA|A|414
4YZV|1|XA|A|415
4YZV|1|XA|G|416
*
4YZV|1|XA|U|427
4YZV|1|XA|G|428
4YZV|1|XA|U|429
4YZV|1|XA|A|430
4YZV|1|XA|A|431
4YZV|1|XA|A|432
4YZV|1|XA|C|433

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4