IL_4YZV_215

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

4YZV|1|XA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_215 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.0558

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

4YZV|1|XA|G|925
4YZV|1|XA|G|926
4YZV|1|XA|G|927
*
4YZV|1|XA|U|1390
4YZV|1|XA|U|1391

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XX

messenger RNA