IL_4YZV_270

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

4YZV|1|YA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_270 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.1836

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4YZV|1|YA|C|844
4YZV|1|YA|G|845
4YZV|1|YA|C|846
*
4YZV|1|YA|G|931
4YZV|1|YA|G|932
4YZV|1|YA|A|933
4YZV|1|YA|G|934

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y3

50S ribosomal protein L30