IL_4YZV_283
3D structure
- PDB id
- 4YZV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAGUG*CUUAAG
- Length
- 13 nucleotides
- Bulged bases
- 4YZV|1|YA|U|1142, 4YZV|1|YA|A|1143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4YZV_283 not in the Motif Atlas
- Geometric match to IL_7RQB_039
- Geometric discrepancy: 0.0785
- The information below is about IL_7RQB_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.3
- Basepair signature
- cWW-cSH-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 5
Unit IDs
4YZV|1|YA|C|1018
4YZV|1|YA|U|1019
4YZV|1|YA|A|1020
4YZV|1|YA|A|1021
4YZV|1|YA|G|1022
4YZV|1|YA|U|1023
4YZV|1|YA|G|1024
*
4YZV|1|YA|C|1140
4YZV|1|YA|U|1141
4YZV|1|YA|U|1142
4YZV|1|YA|A|1142|||A
4YZV|1|YA|A|1143
4YZV|1|YA|G|1144
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y9
- 50S ribosomal protein L36
- Chain YB
- 5S ribosomal RNA; 5S rRNA
- Chain YH
- 50S ribosomal protein L6
- Chain YN
- 50S ribosomal protein L13
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