IL_4YZV_338

3D structure

PDB id

4YZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

4YZV|1|YA|U|2491

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4YZV_338 not in the Motif Atlas

Homologous match to IL_7RQB_094

Geometric discrepancy: 0.0626

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

4YZV|1|YA|A|2459
4YZV|1|YA|U|2460
4YZV|1|YA|C|2461
*
4YZV|1|YA|G|2489
4YZV|1|YA|G|2490
4YZV|1|YA|U|2491
4YZV|1|YA|U|2492
4YZV|1|YA|U|2493

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain YQ

50S ribosomal protein L16

Chain Z6

CC-puromycin