IL_4Z3S_238

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4Z3S|1|2A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z3S_238 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1235

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4Z3S|1|2A|C|1686
4Z3S|1|2A|G|1687
4Z3S|1|2A|U|1688
4Z3S|1|2A|A|1689
4Z3S|1|2A|A|1690
4Z3S|1|2A|C|1691
*
4Z3S|1|2A|G|1696
4Z3S|1|2A|G|1697
4Z3S|1|2A|A|1698
4Z3S|1|2A|G|1699
4Z3S|1|2A|A|1700
4Z3S|1|2A|A|1701
4Z3S|1|2A|G|1702

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA