IL_4Z3S_247

3D structure

PDB id

4Z3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

4Z3S|1|2A|A|1938, 4Z3S|1|2A|U|1944, 4Z3S|1|2A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z3S_247 not in the Motif Atlas

Homologous match to IL_7RQB_077

Geometric discrepancy: 0.0546

The information below is about IL_7RQB_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4Z3S|1|2A|C|1934
4Z3S|1|2A|G|1935
4Z3S|1|2A|A|1936
4Z3S|1|2A|A|1937
4Z3S|1|2A|A|1938
4Z3S|1|2A|5MU|1939
4Z3S|1|2A|U|1940
4Z3S|1|2A|C|1941
4Z3S|1|2A|5MC|1942
4Z3S|1|2A|U|1943
4Z3S|1|2A|U|1944
4Z3S|1|2A|G|1945
*
4Z3S|1|2A|C|1961
4Z3S|1|2A|5MC|1962
4Z3S|1|2A|U|1963
4Z3S|1|2A|G|1964

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2w

Transfer RNA; tRNA