IL_4Z8C_059

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_059 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.0796

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4Z8C|1|1A|A|1515
4Z8C|1|1A|G|1516
4Z8C|1|1A|A|1517
4Z8C|1|1A|A|1518
4Z8C|1|1A|G|1519
*
4Z8C|1|1A|U|1565
4Z8C|1|1A|G|1566
4Z8C|1|1A|G|1567
4Z8C|1|1A|U|1568

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains