IL_4Z8C_069

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4Z8C|1|1A|G|1831, 4Z8C|1|1A|G|1846, 4Z8C|1|1A|U|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_069 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0365

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4Z8C|1|1A|U|1828
4Z8C|1|1A|G|1829
4Z8C|1|1A|C|1830
4Z8C|1|1A|G|1831
4Z8C|1|1A|A|1832
4Z8C|1|1A|A|1833
4Z8C|1|1A|C|1834
*
4Z8C|1|1A|G|1843
4Z8C|1|1A|G|1844
4Z8C|1|1A|A|1845
4Z8C|1|1A|G|1846
4Z8C|1|1A|G|1847
4Z8C|1|1A|U|1848
4Z8C|1|1A|A|1849
4Z8C|1|1A|U|1850
4Z8C|1|1A|A|1851

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA