IL_4Z8C_089

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_089 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.0867

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

4Z8C|1|1A|A|2470
4Z8C|1|1A|U|2471
4Z8C|1|1A|C|2472
*
4Z8C|1|1A|G|2500
4Z8C|1|1A|G|2501
4Z8C|1|1A|U|2502
4Z8C|1|1A|U|2503
4Z8C|1|1A|U|2504

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16

Chain 1z

Oncocin