IL_4Z8C_092

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4Z8C|1|1A|G|2587, 4Z8C|1|1A|A|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_092 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.0536

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

4Z8C|1|1A|C|2521
4Z8C|1|1A|U|2522
4Z8C|1|1A|C|2523
*
4Z8C|1|1A|G|2585
4Z8C|1|1A|C|2586
4Z8C|1|1A|G|2587
4Z8C|1|1A|A|2588
4Z8C|1|1A|G|2589

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3