IL_4Z8C_180

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_180 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0481

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4Z8C|1|2A|U|227
4Z8C|1|2A|G|228
4Z8C|1|2A|A|229
4Z8C|1|2A|G|230
4Z8C|1|2A|U|231
4Z8C|1|2A|A|232
4Z8C|1|2A|G|233
*
4Z8C|1|2A|C|241
4Z8C|1|2A|G|242
4Z8C|1|2A|A|243
4Z8C|1|2A|A|244
4Z8C|1|2A|A|245
4Z8C|1|2A|G|246

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2P

50S ribosomal protein L15