IL_4Z8C_223

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

4Z8C|1|2A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_223 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.1555

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4Z8C|1|2A|C|1246
4Z8C|1|2A|G|1247
4Z8C|1|2A|A|1248
4Z8C|1|2A|U|1249
4Z8C|1|2A|G|1250
*
4Z8C|1|2A|U|1285
4Z8C|1|2A|A|1286
4Z8C|1|2A|A|1287
4Z8C|1|2A|G|1288

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15