IL_4Z8C_226

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_226 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0381

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4Z8C|1|2A|A|1307
4Z8C|1|2A|U|1308
4Z8C|1|2A|G|1309
4Z8C|1|2A|A|1310
4Z8C|1|2A|G|1311
4Z8C|1|2A|U|1312
4Z8C|1|2A|A|1313
4Z8C|1|2A|A|1314
*
4Z8C|1|2A|U|2032
4Z8C|1|2A|G|2033
4Z8C|1|2A|A|2034
4Z8C|1|2A|A|2035
4Z8C|1|2A|A|2036
4Z8C|1|2A|U|2037
4Z8C|1|2A|U|2038

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2F

50S ribosomal protein L4

Chain 2W

50S ribosomal protein L22