IL_4Z8C_262

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAGG*CCGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_262 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.385

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96332.5

Basepair signature

cWW-cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4Z8C|1|2A|C|2308
4Z8C|1|2A|A|2309
4Z8C|1|2A|G|2310
4Z8C|1|2A|G|2311
*
4Z8C|1|2A|C|2327
4Z8C|1|2A|C|2328
4Z8C|1|2A|G|2329
4Z8C|1|2A|G|2330
4Z8C|1|2A|A|2331
4Z8C|1|2A|G|2332

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2G

50S ribosomal protein L5

Chain 2S

50S ribosomal protein L18