IL_4Z8C_281

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4Z8C|1|2A|A|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4Z8C_281 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0512

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4Z8C|1|2A|G|2749
4Z8C|1|2A|A|2750
4Z8C|1|2A|U|2751
4Z8C|1|2A|A|2752
4Z8C|1|2A|A|2753
4Z8C|1|2A|C|2754
*
4Z8C|1|2A|G|2774
4Z8C|1|2A|G|2775
4Z8C|1|2A|A|2776
4Z8C|1|2A|A|2777
4Z8C|1|2A|G|2778
4Z8C|1|2A|C|2779

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13