IL_4ZER_044

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUG*UAAG

Length

9 nucleotides

Bulged bases

4ZER|1|1A|U|1250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_044 not in the Motif Atlas

Homologous match to IL_7RQB_046

Geometric discrepancy: 0.0614

The information below is about IL_7RQB_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.2

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4ZER|1|1A|C|1247
4ZER|1|1A|G|1248
4ZER|1|1A|A|1249
4ZER|1|1A|U|1250
4ZER|1|1A|G|1251
*
4ZER|1|1A|U|1286
4ZER|1|1A|A|1287
4ZER|1|1A|A|1288
4ZER|1|1A|G|1289

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15