IL_4ZER_094

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

4ZER|1|1A|U|2503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_094 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.0833

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

4ZER|1|1A|A|2471
4ZER|1|1A|U|2472
4ZER|1|1A|C|2473
*
4ZER|1|1A|G|2501
4ZER|1|1A|G|2502
4ZER|1|1A|U|2503
4ZER|1|1A|U|2504
4ZER|1|1A|U|2505

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16

Chain 1y

Onc112