IL_4ZER_216

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4ZER|1|2A|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_216 not in the Motif Atlas

Homologous match to IL_7RQB_042

Geometric discrepancy: 0.3295

The information below is about IL_7RQB_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.4

Basepair signature

cWW-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4ZER|1|2A|C|1043
4ZER|1|2A|G|1044
4ZER|1|2A|A|1045
4ZER|1|2A|A|1046
4ZER|1|2A|G|1047
4ZER|1|2A|A|1048
4ZER|1|2A|C|1049
4ZER|1|2A|A|1050
4ZER|1|2A|G|1051
*
4ZER|1|2A|U|1108
4ZER|1|2A|C|1109
4ZER|1|2A|G|1110
4ZER|1|2A|A|1111
4ZER|1|2A|G|1112

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6