IL_4ZER_222

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_222 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.0461

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4ZER|1|2A|A|1262
4ZER|1|2A|U|1263
4ZER|1|2A|G|1264
4ZER|1|2A|A|1265
4ZER|1|2A|G|1266
4ZER|1|2A|U|1267
4ZER|1|2A|A|1268
4ZER|1|2A|A|1269
*
4ZER|1|2A|U|2011
4ZER|1|2A|G|2012
4ZER|1|2A|A|2013
4ZER|1|2A|A|2014
4ZER|1|2A|A|2015
4ZER|1|2A|U|2016
4ZER|1|2A|U|2017

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2F

50S ribosomal protein L4

Chain 2W

50S ribosomal protein L22