IL_4ZER_240

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

4ZER|1|2A|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_240 not in the Motif Atlas

Geometric match to IL_5J7L_307

Geometric discrepancy: 0.0932

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

4ZER|1|2A|A|1669
4ZER|1|2A|C|1670
4ZER|1|2A|U|1671
4ZER|1|2A|C|1672
4ZER|1|2A|U|1673
4ZER|1|2A|G|1674
*
4ZER|1|2A|C|1990
4ZER|1|2A|U|1991
4ZER|1|2A|G|1992
4ZER|1|2A|U|1993

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14