3D structure

PDB id
4ZER (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
4ZER|1|2A|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4ZER_241 not in the Motif Atlas
Geometric match to IL_7RQB_068
Geometric discrepancy: 0.0622
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

4ZER|1|2A|C|1686
4ZER|1|2A|G|1687
4ZER|1|2A|U|1688
4ZER|1|2A|A|1689
4ZER|1|2A|A|1690
4ZER|1|2A|C|1691
*
4ZER|1|2A|G|1696
4ZER|1|2A|G|1697
4ZER|1|2A|A|1698
4ZER|1|2A|G|1699
4ZER|1|2A|A|1700
4ZER|1|2A|A|1701
4ZER|1|2A|G|1702

Current chains

Chain 2A
23s ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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