IL_4ZER_284

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4ZER|1|2A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_284 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0712

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4ZER|1|2A|G|2737
4ZER|1|2A|A|2738
4ZER|1|2A|U|2739
4ZER|1|2A|A|2740
4ZER|1|2A|A|2741
4ZER|1|2A|C|2742
*
4ZER|1|2A|G|2762
4ZER|1|2A|G|2763
4ZER|1|2A|A|2764
4ZER|1|2A|A|2765
4ZER|1|2A|G|2766
4ZER|1|2A|C|2767

Current chains

Chain 2A

23s ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13