IL_4ZER_329

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

4ZER|1|2a|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_329 not in the Motif Atlas

Homologous match to IL_5J7L_040

Geometric discrepancy: 0.0887

The information below is about IL_5J7L_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

4ZER|1|2a|G|925
4ZER|1|2a|G|926
4ZER|1|2a|G|927
*
4ZER|1|2a|U|1390
4ZER|1|2a|U|1391

Current chains

Chain 2a

16s ribosomal RNA

Nearby chains

Chain A

mRNA