IL_4ZER_342

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_342 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1221

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4ZER|1|2a|C|1158
4ZER|1|2a|U|1159
4ZER|1|2a|G|1160
4ZER|1|2a|C|1161
*
4ZER|1|2a|G|1175
4ZER|1|2a|A|1176
4ZER|1|2a|G|1177
4ZER|1|2a|G|1178
4ZER|1|2a|A|1179
4ZER|1|2a|A|1180
4ZER|1|2a|G|1181

Current chains

Chain 2a

16s ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9