IL_4ZER_359

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZER_359 not in the Motif Atlas

Homologous match to IL_4LFB_067

Geometric discrepancy: 0.1075

The information below is about IL_4LFB_067

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

4ZER|1|1a|C|1259
4ZER|1|1a|C|1260
4ZER|1|1a|A|1261
4ZER|1|1a|C|1262
*
4ZER|1|1a|G|1273
4ZER|1|1a|G|1274
4ZER|1|1a|A|1275
4ZER|1|1a|G|1276

Current chains

Chain 1a

16s ribosomal RNA

Nearby chains

Chain 1u

30S ribosomal protein Thx