IL_4ZSN_189

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4ZSN|1|XA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZSN_189 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.0908

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4ZSN|1|XA|G|409
4ZSN|1|XA|G|410
4ZSN|1|XA|A|411
4ZSN|1|XA|A|412
4ZSN|1|XA|G|413
4ZSN|1|XA|A|414
4ZSN|1|XA|A|415
4ZSN|1|XA|G|416
*
4ZSN|1|XA|U|427
4ZSN|1|XA|G|428
4ZSN|1|XA|U|429
4ZSN|1|XA|A|430
4ZSN|1|XA|A|431
4ZSN|1|XA|A|432
4ZSN|1|XA|C|433

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4