IL_4ZSN_303

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

4ZSN|1|YA|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ZSN_303 not in the Motif Atlas

Homologous match to IL_7RQB_069

Geometric discrepancy: 0.1187

The information below is about IL_7RQB_069

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

4ZSN|1|YA|G|1770
4ZSN|1|YA|C|1771
*
4ZSN|1|YA|G|1980
4ZSN|1|YA|A|1981
4ZSN|1|YA|C|1982

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YD

50S ribosomal protein L2