IL_5A2Q_011

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37847.1

Basepair signature

cWW-cWW-L-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5A2Q|1|2|U|116
5A2Q|1|2|C|117
5A2Q|1|2|C|118
5A2Q|1|2|U|119
5A2Q|1|2|U|120
5A2Q|1|2|U|121
*
5A2Q|1|2|A|343
5A2Q|1|2|U|344
5A2Q|1|2|U|345
5A2Q|1|2|C|346
5A2Q|1|2|G|347

Current chains

Chain 2

18S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN ES4

Chain I

RIBOSOMAL PROTEIN ES8