IL_5A2Q_013

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUACUU*AUGCCGAC

Length

14 nucleotides

Bulged bases

5A2Q|1|2|C|142

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5A2Q|1|2|G|130
5A2Q|1|2|U|140
5A2Q|1|2|A|141
5A2Q|1|2|C|142
5A2Q|1|2|U|143
5A2Q|1|2|U|144
*
5A2Q|1|2|A|175
5A2Q|1|2|U|176
5A2Q|1|2|G|177
5A2Q|1|2|C|178
5A2Q|1|2|C|179
5A2Q|1|2|G|180
5A2Q|1|2|A|181
5A2Q|1|2|C|182

Current chains

Chain 2

18S RRNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN ES6