IL_5A2Q_014

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5A2Q|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97118.1

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

7

Unit IDs

5A2Q|1|2|G|145
5A2Q|1|2|G|146
5A2Q|1|2|A|147
5A2Q|1|2|U|148
5A2Q|1|2|A|149
5A2Q|1|2|A|150
5A2Q|1|2|C|151
*
5A2Q|1|2|G|167
5A2Q|1|2|C|168
5A2Q|1|2|U|169
5A2Q|1|2|A|170
5A2Q|1|2|A|171
5A2Q|1|2|U|172
5A2Q|1|2|A|173
5A2Q|1|2|C|174

Current chains

Chain 2

18S RRNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN ES6

Chain Y

RIBOSOMAL PROTEIN ES24

Chain w

RIBOSOMAL PROTEIN EL24