IL_5A2Q_015

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09763.1

Basepair signature

cWW-cWH-cWW

Number of instances in this motif group

62

Unit IDs

5A2Q|1|2|U|152
5A2Q|1|2|G|153
5A2Q|1|2|U|154
*
5A2Q|1|2|A|164
5A2Q|1|2|G|165
5A2Q|1|2|A|166

Current chains

Chain 2

18S RRNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN ES6

Chain Y

RIBOSOMAL PROTEIN ES24

Chain w

RIBOSOMAL PROTEIN EL24