IL_5A2Q_017

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

5A2Q|1|2|U|305, 5A2Q|1|2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46998.1

Basepair signature

cWW-R-R-cWW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5A2Q|1|2|C|216
5A2Q|1|2|A|217
5A2Q|1|2|U|218
5A2Q|1|2|U|219
*
5A2Q|1|2|A|302
5A2Q|1|2|C|303
5A2Q|1|2|C|304
5A2Q|1|2|U|305
5A2Q|1|2|C|306
5A2Q|1|2|G|307
5A2Q|1|2|G|308
5A2Q|1|2|G|309

Current chains

Chain 2

18S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN ES4

Chain I

RIBOSOMAL PROTEIN ES8