IL_5A2Q_017
3D structure
- PDB id
- 5A2Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the human ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUU*ACCUCGGG
- Length
- 12 nucleotides
- Bulged bases
- 5A2Q|1|2|U|305, 5A2Q|1|2|G|307
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46998.1
- Basepair signature
- cWW-R-R-cWW-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5A2Q|1|2|C|216
5A2Q|1|2|A|217
5A2Q|1|2|U|218
5A2Q|1|2|U|219
*
5A2Q|1|2|A|302
5A2Q|1|2|C|303
5A2Q|1|2|C|304
5A2Q|1|2|U|305
5A2Q|1|2|C|306
5A2Q|1|2|G|307
5A2Q|1|2|G|308
5A2Q|1|2|G|309
Current chains
- Chain 2
- 18S RRNA
Nearby chains
- Chain E
- RIBOSOMAL PROTEIN ES4
- Chain I
- RIBOSOMAL PROTEIN ES8
Coloring options: