IL_5A2Q_018

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGUG*CUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5A2Q|1|2|C|223
5A2Q|1|2|A|224
5A2Q|1|2|G|225
5A2Q|1|2|U|287
5A2Q|1|2|G|288
*
5A2Q|1|2|C|295
5A2Q|1|2|U|296
5A2Q|1|2|A|297
5A2Q|1|2|G|298

Current chains

Chain 2

18S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN ES4

Chain G

RIBOSOMAL PROTEIN ES6

Chain I

RIBOSOMAL PROTEIN ES8

Chain L

RIBOSOMAL PROTEIN US17