3D structure

PDB id
5A2Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HCV IRES bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGG*CGAUUC
Length
9 nucleotides
Bulged bases
5A2Q|1|2|U|428
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_11289.1
Basepair signature
cWW-R-tHS-cWW
Number of instances in this motif group
8

Unit IDs

5A2Q|1|2|G|411
5A2Q|1|2|G|412
5A2Q|1|2|G|413
*
5A2Q|1|2|C|424
5A2Q|1|2|G|425
5A2Q|1|2|A|426
5A2Q|1|2|U|427
5A2Q|1|2|U|428
5A2Q|1|2|C|429

Current chains

Chain 2
18S RRNA

Nearby chains

Chain E
RIBOSOMAL PROTEIN ES4
Chain J
RIBOSOMAL PROTEIN US4
Chain X
RIBOSOMAL PROTEIN US12

Coloring options:

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