IL_5A2Q_024

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5A2Q_024 not in the Motif Atlas

Homologous match to IL_4V88_405

Geometric discrepancy: 0.1231

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

5A2Q|1|2|G|437
5A2Q|1|2|G|438
5A2Q|1|2|A|439
*
5A2Q|1|2|U|454
5A2Q|1|2|A|455
5A2Q|1|2|C|456

Current chains

Chain 2

18S RRNA

Nearby chains

Chain G

RIBOSOMAL PROTEIN ES6

Chain I

RIBOSOMAL PROTEIN ES8