IL_5A2Q_034

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

5A2Q|1|2|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29931.1

Basepair signature

cWW-R-R-tWH-cSW-L-R-R-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5A2Q|1|2|G|611
5A2Q|1|2|U|612
5A2Q|1|2|G|613
5A2Q|1|2|C|614
5A2Q|1|2|C|615
5A2Q|1|2|A|616
5A2Q|1|2|G|617
*
5A2Q|1|2|C|624
5A2Q|1|2|G|625
5A2Q|1|2|G|626
5A2Q|1|2|U|627
5A2Q|1|2|A|628
5A2Q|1|2|A|629
5A2Q|1|2|U|630
5A2Q|1|2|U|631
5A2Q|1|2|C|632

Current chains

Chain 2

18S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN US3

Chain X

RIBOSOMAL PROTEIN US12

Chain e

RIBOSOMAL PROTEIN ES30