IL_5A2Q_035

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5A2Q_035 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1505

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5A2Q|1|2|C|663
5A2Q|1|2|A|664
5A2Q|1|2|G|665
*
5A2Q|1|2|C|1162
5A2Q|1|2|C|1163
5A2Q|1|2|G|1164

Current chains

Chain 2

18S RRNA

Nearby chains

Chain C

RIBOSOMAL PROTEIN US5

Chain X

RIBOSOMAL PROTEIN US12