IL_5A2Q_041

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAAAAUU*ACCGCAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22201.1

Basepair signature

cWW-cWW-L-R-R-R-R-L-L-L-L-L-cWW

Number of instances in this motif group

5

Unit IDs

5A2Q|1|2|G|807
5A2Q|1|2|A|808
5A2Q|1|2|A|809
5A2Q|1|2|A|810
5A2Q|1|2|A|811
5A2Q|1|2|A|812
5A2Q|1|2|A|813
5A2Q|1|2|U|814
5A2Q|1|2|U|815
*
5A2Q|1|2|A|849
5A2Q|1|2|C|850
5A2Q|1|2|C|851
5A2Q|1|2|G|852
5A2Q|1|2|C|853
5A2Q|1|2|A|854
5A2Q|1|2|G|855
5A2Q|1|2|C|856

Current chains

Chain 2

18S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN ES4

Chain J

RIBOSOMAL PROTEIN US4

Chain L

RIBOSOMAL PROTEIN US17

Chain W

RIBOSOMAL PROTEIN US8