IL_5A2Q_042

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5A2Q_042 not in the Motif Atlas

Geometric match to IL_6OL3_002

Geometric discrepancy: 0.1237

The information below is about IL_6OL3_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

5A2Q|1|2|G|874
5A2Q|1|2|A|875
5A2Q|1|2|C|876
*
5A2Q|1|2|G|910
5A2Q|1|2|C|911
5A2Q|1|2|C|912

Current chains

Chain 2

18S RRNA

Nearby chains

Chain H

RIBOSOMAL PROTEIN ES7

Chain r

RIBOSOMAL PROTEIN EL19